Curriculum Vitaes

Hidetoshi Urakubo

  (浦久保 秀俊)

Profile Information

Affiliation
Associate professor, Department of Biomedical Data Science, School of Medicine, Fujita Health University
Degree
Ph.D(Mar, 2003, The University of Tokyo)

Researcher number
40512140
J-GLOBAL ID
201101036451836391
researchmap Member ID
B000004615

External link

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Motivated by an interest in the memorization mechanisms of the brain, I have conducted computer simulations to investigate whether current knowledge about molecular neuroscience provides a synaptic basis for learning and memory—that is, whether synaptic plasticity underlies the brain’s ability to learn and remember. My research goal is the derivation of mathematical models of synaptic plasticity. The rules of synaptic plasticity are not simple. Synaptic plasticity generally occurs in a synapse-specific manner, but in some case it occurs cooperatively among synapses. It is also significantly affected by age, emotional state, and psychiatric disorders. I focus on the first steps of how neural functions emerge from complex biochemical reactions at synapses. (more)


Committee Memberships

 1

Awards

 1

Papers

 29
  • Takashi Miyata, Daisuke Hagiwara, Ryosei Ashida, Satoshi Naito, Yohei Kawaguchi, Tomoko Handa, Tomoko Kobayashi, Mariko Sugiyama, Takeshi Onoue, Shintaro Iwama, Hidetaka Suga, Ryoichi Banno, Mami Matsumoto, Hidetoshi Urakubo, Nobuhiko Ohno, Hiroshi Arima
    Cell and Tissue Research, Oct 4, 2025  Peer-reviewed
    Abstract Familial neurohypophysial diabetes insipidus (FNDI) is an autosomal dominant disorder caused by mutations in the arginine vasopressin (AVP) gene. In AVP neurons in a mouse model of FNDI, aggregates of mutant AVP precursors accumulate within a specific compartment of the endoplasmic reticulum (ER). However, as FNDI mice aged, or were exposed to repeated water deprivation, the ER lumen dilated and mutant aggregates dispersed throughout the ER. Meanwhile, autophagic isolation membranes, known as phagophores, emerged to envelop ER containing these aggregates, indicating induction of ER-phagy. Previous in vitro studies showed that phagophores originate from ER membranes, but the structural relationship between phagophores and the ER membrane in vivo remains unknown. In this study, we used serial block-face scanning electron microscopy to investigate the structural relationship between phagophores, ER membranes, and protein aggregates within dilated ER of AVP neurons from FNDI mice subjected to intermittent water deprivation for 4 weeks. Three-dimensional analysis revealed that phagophores enveloped aggregates located within the dilated ER. Serial imaging further demonstrated a physical connection between these phagophores and intact ER membranes. This study provides the first in vivo evidence of the structural continuity between phagophores and the ER membrane in AVP neurons in a mouse model of FNDI.
  • Hidetoshi Urakubo
    Microscopy, 74(3) 223-232, Jun, 2025  Peer-reviewedInvitedLead authorLast authorCorresponding author
  • Vikas Pandey, Tomohisa Hosokawa, Yasunori Hayashi, Hidetoshi Urakubo
    Cell Reports, 44(4) 115504, Apr 8, 2025  Peer-reviewedLast authorCorresponding author
    Abstract Liquid–liquid phase separation (LLPS) of biological macromolecules leads to the formation of various membraneless organelles. LLPS can not only form homogenous condensates but also multilayered and multiphase condensates, which can mediate complex cellular functions. However, the factors that determine the topological features of multiphase condensates are not fully understood. Herein, we focused on Ca2+/calmodulin-dependent protein kinase II (CaMKII), a major postsynaptic protein that undergoes various forms of LLPS with other postsynaptic proteins, and present a minimalistic computational model that reproduces these forms of LLPS, including a form of two-phase condensates, phase-in-phase (PIP) organization. Analyses of this model revealed that the competitive binding of two types of client proteins is required for the PIP formation. The PIP only formed when CaMKII had high valency and a short linker length. Such CaMKII proteins exhibited a low surface tension, a modular structure, and slow diffusion. These properties are consistent with the functions required by CaMKII to store information at the synaptic level. Thus, the computational modeling reveals new structure–function relationships for CaMKII as a synaptic memory unit.
  • Tomonobu Ezure, Kyoichi Matsuzaki, Hidetoshi Urakubo, Nobuhiko Ohno
    Scientific reports, 15(1) 4195-4195, Feb 4, 2025  
    This study developed a three-dimensional ultrastructural analysis application using serial block-face scanning electron microscopy (SBF-SEM) to investigate surgically acquired human skin tissues containing the arrector pili muscle. We utilized the en bloc staining, including reduced osmium, thiocarbohydrazide, and lead aspartate, as well as the embedding using a carbon-based conductive resin. Next, we obtained serial images with SBF-SEM. The results revealed dense nerve fiber networks branching from nearby nerve fiber bundles outside the muscle and running among muscle fibers. Additionally, the dense nerve network running through and along arrector pili muscle fibers rarely penetrates the connective tissues between smooth muscle fibers and epithelial cells. Furthermore, in the observation area, no individual smooth muscle fibers formed adhesion structures with the epithelial cells of the hair follicle, ending in the dermal extracellular matrix near the epithelial cells. These results indicate the usefulness of this approach for three-dimensional ultrastructural analyses of human skin tissues comprising follicular units and revealing structural changes in skin tissues, especially the arrector pili muscle and nerve fibers with hair follicular epithelium, in aging and diseased conditions.
  • Takayuki Onai, Noritaka Adachi, Hidetoshi Urakubo, Fumiaki Sugahara, Toshihiro Aramaki, Mami Matsumoto, Nobuhiko Ohno
    iScience, 26(12) 108338, Nov, 2023  Peer-reviewed

Misc.

 26

Teaching Experience

 6

Research Projects

 12