研究者業績

野村 健

ノムラ タケシ  (Takeshi Nomura)

基本情報

所属
兵庫県立大学 環境人間学部 准教授
学位
博士(医学)(2002年3月 名古屋大学)
修士(体育学)(1998年3月 福岡大学)

研究者番号
10706790
ORCID ID
 https://orcid.org/0000-0001-8955-3426
J-GLOBAL ID
201801015022519196
researchmap会員ID
B000336005

論文

 34
  • Yasuyuki Sawada, Takeshi Nomura, Boris Martinac, Masahiro Sokabe
    Frontiers in chemistry 11 1175443-1175443 2023年6月6日  査読有り筆頭著者
    The bacterial mechanosensitive channel of large conductance MscL is activated exclusively by increased tension in the membrane bilayer. Despite many proposed models for MscL opening, its precise mechano-gating mechanism, particularly how the received force at the tension sensor transmits to the gate remains incomplete. Previous studies have shown that along with amphipathic N-terminus located near the cytoplasmic surface of the membrane, Phe78 residue near the outer surface also acts as a "tension sensor," while Gly22 is a central constituent of the "hydrophobic gate." Present study focused on elucidating the force transmission mechanism from the sensor Phe78 in the outer transmembrane helix (TM2) to the gate in the inner transmembrane helix (TM1) of MscL by applying the patch clamp and molecular dynamics (MD) simulations to the wild type MscL channel and its single mutants at the sensor (F78N), the gate (G22N) and their combination (G22N/F78N) double mutant. F78N MscL resulted in a severe loss-of-function, while G22N MscL caused a gain-of-function channel exhibiting spontaneous openings at the resting membrane tension. We initially speculated that the spontaneous opening in G22N mutant might occur without tension acting on Phe78 residue. To test this hypothesis, we examined the (G22N/F78N) double mutant, which unexpectedly exhibited neither spontaneous activity nor activity by a relatively high membrane tension. To understand the underlying mechanism, we conducted MD simulations and analyzed the force transduction pathway. Results showed that the mutation at the tension sensor (F78N) in TM2 caused decreased interaction of this residue not only with lipids, but also with a group of amino acids (Ile32-Leu36-Ile40) in the neighboring TM1 helix, which resulted in an inefficient force transmission to the gate-constituting amino acids on TM1. This change also induced a slight tilting of TM1 towards the membrane plane and decreased the size of the channel pore at the gate, which seems to be the major mechanism for the inhibition of spontaneous opening of the double mutant channel. More importantly, the newly identified interaction between the TM2 (Phe78) and adjacent TM1 (Ile32-Leu36-Ile40) helices seems to be an essential force transmitting mechanism for the stretch-dependent activation of MscL given that substitution of any one of these four amino acids with Asn resulted in severe loss-of-function MscL as reported in our previous work.
  • Ibrahim M Almanjahie, Ramzan Nazim Khan, Robin K Milne, Takeshi Nomura, Boris Martinac
    European biophysics journal : EBJ 48(4) 383-393 2019年5月  査読有り
    Ion channel data recorded using the patch clamp technique are low-pass filtered to remove high-frequency noise. Almanjahie et al. (Eur Biophys J 44:545-556, 2015) based statistical analysis of such data on a hidden Markov model (HMM) with a moving average adjustment for the filter but without correlated noise, and used the EM algorithm for parameter estimation. In this paper, we extend their model to include correlated noise, using signal processing methods and deconvolution to pre-whiten the noise. The resulting data can be modelled as a standard HMM and parameter estimates are again obtained using the EM algorithm. We evaluate this approach using simulated data and also apply it to real data obtained from the mechanosensitive channel of large conductance (MscL) in Escherichia coli. Estimates of mean conductances are comparable to literature values. The key advantages of this method are that it is much simpler and computationally considerably more efficient than currently used HMM methods that include filtering and correlated noise.
  • Toshihiro Masuda, Kentarou Baba, Takeshi Nomura, Kazuya Tsujita, Tomo Murayama, Toshiki Itoh, Tomoka Takatani-Nakase, Masahiro Sokabe, Naoyuki Inagaki, Shiroh Futaki
    Communications biology 2 243-243 2019年  査読有り
    Tension in cell membranes is closely related to various cellular events, including cell movement and morphogenesis. Therefore, modulation of membrane tension can be a new approach for manipulating cellular events. Here, we show that an amphipathic peptide derived from the influenza M2 protein (M2[45-62]) yields lamellipodia at multiple sites in the cell. Effect of M2[45-62] on cell membrane tension was evaluated by optical tweezer. The membrane tension sensor protein FBP17 was involved in M2[45-62]-driven lamellipodium formation. Lysine-to-arginine substitution in M2[45-62] further enhanced its activity of lamellipodium formation. M2[45-62] had an ability to reduce cell motility, evaluated by scratch wound migration and transwell migration assays. An increase in neurite outgrowth was also observed after treatment with M2[45-62]. The above results suggest the potential of M2[45-62] to modulate cell movement and morphology by modulating cell membrane tension.
  • Navid Bavi, Adam D. Martinac, D. Marien Cortes, Omid Bavi, Pietro Ridone, Takeshi Nomura, Adam P. Hill, Boris Martinac, Eduardo Perozo
    SCIENTIFIC REPORTS 7(1) 17229-17229 2017年12月  査読有り
  • Takeshi Nomura, Akiyuki Taruno, Makoto Shiraishi, Takashi Nakahari, Toshio Inui, Masahiro Sokabe, Douglas C. Eaton, Yoshinori Marunaka
    SCIENTIFIC REPORTS 7(1) 10512-10512 2017年9月  査読有り筆頭著者
  • Takeshi Nomura, Masahiro Sokabe, Kenjiro Yoshimura
    BIOMED RESEARCH INTERNATIONAL 2016 2401657-2401657 2016年  査読有り筆頭著者責任著者
  • Takeshi Nomura, Charles D. Cox, Navid Bavi, Masahiro Sokabe, Boris Martinac
    FASEB JOURNAL 29(10) 4334-4345 2015年10月  査読有り筆頭著者
  • Ibrahim M Almanjahie, R Nazim Khan, Robin K Milne, Takeshi Nomura, Boris Martinac
    European biophysics journal : EBJ 44(7) 545-56 2015年10月  査読有り
  • C. D. Cox, Y. Nakayama, T. Nomura, B. Martinac
    PFLUGERS ARCHIV-EUROPEAN JOURNAL OF PHYSIOLOGY 467(1) 3-13 2015年1月  査読有り
  • Radomir I. Slavchov, Takeshi Nomura, Boris Martinac, Masahiro Sokabe, Frederick Sachs
    JOURNAL OF PHYSICAL CHEMISTRY B 118(44) 12660-12672 2014年11月  査読有り
  • Yong Wang, Yanxin Liu, Hannah A Deberg, Takeshi Nomura, Melinda Tonks Hoffman, Paul R Rohde, Klaus Schulten, Boris Martinac, Paul R Selvin
    eLife 3 e01834 2014年2月18日  査読有り
  • Boris Martinac, Takeshi Nomura, Gamma Chi, Evgeny Petrov, Paul R. Rohde, Andrew R. Battle, Alexander Foo, Maryrose Constantine, Rosalba Rothnagel, Sonia Carne, Evelyne Deplazes, Bruce Cornell, Charles G. Cranfield, Ben Hankamer, Michael J. Landsberg
    ANTIOXIDANTS & REDOX SIGNALING 20(6) 952-969 2014年2月  査読有り
  • Shaista Shaikh, Charles D Cox, Takeshi Nomura, Boris Martinac
    Channels (Austin, Tex.) 8(4) 321-6 2014年  査読有り
  • Michael Becker, Kirsten Börngen, Takeshi Nomura, Andrew R Battle, Kay Marin, Boris Martinac, Reinhard Krämer
    Biochimica et biophysica acta 1828(4) 1230-40 2013年4月  査読有り
    Corynebacterium glutamicum is used in microbial biotechnology for the production of amino acids, in particular glutamate. The mechanism of glutamate excretion, however, is not yet fully understood. Recently, evidence was provided that the NCgl1221 gene product from C. glutamicum ATCC 13869, a MscS-type mechanosensitive efflux channel, is responsible for glutamate efflux [1]. The major difference of NCgl1221 and the homologous protein MscCG of C. glutamicum ATCC 13032 from Escherichia coli MscS and most other MscS-type proteins is the presence of an additional, 247 amino acid long C-terminal domain. By topology analysis, we show that this domain in MscCG carries a transmembrane segment. We have generated selected C-terminal truncations of MscCG, gain-of-function and loss-of-function constructs of both E. coli MscS and C. glutamicum MscCG, as well as fusion constructs of the two proteins. These mutant proteins were investigated for mechanosensitive efflux, MS channel activity, glutamate excretion and their impact on membrane potential. We provide evidence that the channel domain of MscCG mediates glutamate efflux in response to penicillin treatment, and that the E. coli MscS channel is to some extent able to function in a similar manner. We further show that the C-terminal domain of MscCG has a significant impact for function and/or regulation of MscCG. Significantly, a positive effect on glutamate efflux of the C-terminal extension of MscCG from C. glutamicum was also observed when fused to the E. coli MscS channel.
  • Evgeny Petrov, Dinesh Palanivelu, Maryrose Constantine, Paul R. Rohde, Charles D. Cox, Takeshi Nomura, Daniel L. Minor, Boris Martinac
    BIOPHYSICAL JOURNAL 104(7) 1426-1434 2013年4月  査読有り
  • Yoshinori Marunaka, Wataru Aoi, Shigekuni Hosogi, Naomi Niisato, Noriko Yokoyama, Hiroki Hayata, Hiroaki Miyazaki, Katsuyuki Kusuzaki, Akiyuki Taruno, Takeshi Nomura
    INTERNATIONAL JOURNAL OF MOLECULAR MEDICINE 32 S50-S50 2013年  査読有り
  • Boris Martinac, Paul R Rohde, Charles G Cranfield, Takeshi Nomura
    Methods in molecular biology (Clifton, N.J.) 966 367-80 2013年  査読有り
    Ion channel studies have been focused on ion channels from animal and human cells over many years. Based on the knowledge acquired, predominantly over the last 20 years, a large diversity of ion channels exists in cellular membranes of prokaryotes as well. Paradoxically, most of what is known about the structure of eukaryotic ion channels is based on the structure of bacterial channels. This is largely due to the suitability of bacterial cells for functional and structural studies of biological macromolecules in a laboratory environment. Development of the "giant spheroplast" preparation from E. coli cells was instrumental for functional studies of ion channels in the bacterial cell membrane. Here we describe detailed protocols used for the preparation of giant spheroplasts as well as protocols used for the patch-clamp recording of native or heterologously expressed ion channels in E. coli spheroplast membrane.
  • Cox CD, Nomura T, Ziegler CS, Campbell AK, Wann KT, Martinac B
    Nature communications 4 2137 2013年  査読有り
  • Takeshi Nomura, Charles G. Cranfield, Evelyne Deplazes, Dylan M. Owen, Alex Macmillan, Andrew R. Battle, Maryrose Constantine, Masahiro Sokabe, Boris Martinac
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 109(22) 8770-8775 2012年5月  査読有り筆頭著者
  • Ben Corry, Annette C. Hurst, Prithwish Pal, Takeshi Nomura, Paul Rigby, Boris Martinac
    JOURNAL OF GENERAL PHYSIOLOGY 136(4) 483-494 2010年10月  査読有り
  • Takeshi Nomura, Masahiro Sokabe, Kenjiro Yoshimura
    Biophysical journal 94(5) 1638-45 2008年3月1日  査読有り筆頭著者
  • 吉村 建二郎, 野村 健, 曽我部 正博
    日本物理學會誌 62(1) 9-15 2007年1月5日  査読有り
    細菌からヒトの細胞に至るすべての細胞は機械刺激を感知して様々な応答を示す.我々はこのような細胞の機能を細胞力覚と名づけたが,その分子機構や生理機能の大半は謎である.現在の最重要課題は細胞力覚の主役である機械センサーの分子構造に基づいて,その仕組みと機能を明らかにすることにある.これまでに明確に同定された機械センサー分子は,MSチャネルと総称されるイオンチャネル型センサーだが,その中で最も研究が進んでいるのは,高次構造が明らかになった細菌のMSチャネルである.本稿では細菌MSチャネルにおける活性化の分子機構を中心に解説し,高等生物MSチャネルとの比較を通してMSチャネルの進化についても触れる.
  • Takeshi Nomura, Masahiro Sokabe, Kenjiro Yoshimura
    BIOPHYSICAL JOURNAL 91(8) 2874-2881 2006年10月  査読有り筆頭著者
  • Kenjiro Yoshimura, Takeshi Nomura, Masahiro Sokabe
    Biophysical journal 86(4) 2113-20 2004年4月  査読有り
  • Ohira Y, Nomura T, Kawano F, Sato Y, Ishihara A, Nonaka I
    Journal of gravitational physiology : a journal of the International Society for Gravitational Physiology 9(2) 49-59 2002年12月  査読有り
  • Fuminori Kawano, Takeshi Nomura, Akihiko Ishihara, Ikuya Nonaka, Yoshinobu Ohira
    Uchu koku kankyo igaku 39(2) 21-9 2002年6月  査読有り
    Effects of hindlimb unloading and reloading on the patterns of landing and posture adjustment in response to head-down drop from a height of approximately 30 cm were investigated in rats. Seven weeks old male Wistar rats were hindlimb-unloaded by tail suspension for 9 consecutive weeks. Motor tests were performed immediately after the termination of suspension and recovery patterns were checked during 8 weeks of ambulation recovery. Although all of the control rats were able to land smoothly by using the four limbs as the shock absorber, the unloaded rats landed by hitting their abdomen. The hindlimb-unloaded, but not control, rats dorsi-flexed their trunk during fall. The mean angle of abdominal side was approximately 145 degrees in control and approximately 215 degrees in unloaded rats. Even though such phenomena were maintained for approximately 12 hours, the response of the trunk angle recovered significantly 2 days later. However, it was not normalized completely even after 8 weeks. Hyper-extension of ankle joints and eversion of hindlimbs at landing were also noted in the unloaded rats. These phenomena were not recovered at all. It was generally suggested that severe detrimental effects on the landing performance of rats are induced following 9-weeks of suspension. And some of the responses are irreversible.
  • Takeshi Nomura, Fuminori Kawano, Myung Sun Kang, Jun Hak Lee, Eun Young Han, Chang Keun Kim, Yuzo Sato, Yoshinobu Ohira
    The Japanese journal of physiology 52(1) 85-93 2002年2月  査読有り筆頭著者
  • Y Ohira, T Yoshinaga, T Nomura, F Kawano, A Ishihara, Nonaka, I, RR Roy, VR Edgerton
    SPACE LIFE SCIENCES: BIOLOGICAL RESEARCH AND SPACE RADIATION 30(4) 777-781 2002年  査読有り
  • F Kawano, T Nomura, A Ishihara, Nonaka, I, Y Ohira
    NEUROSCIENCE 114(4) 1133-1138 2002年  査読有り
  • T Nomura, F Kawano, A Ishihara, Y Sato, G Mitarai, S Iwase, A Kamiya, T Mano, Y Ohira
    NEUROSCIENCE LETTERS 316(1) 55-57 2001年12月  査読有り筆頭著者
  • Y Ohira, T Tanaka, T Yoshinaga, F Kawano, T Nomura, Nonaka, I, DL Allen, RR Roy, VR Edgerton
    AMERICAN JOURNAL OF PHYSIOLOGY-CELL PHYSIOLOGY 280(4) C1008-C1016 2001年4月  査読有り
  • Y. Ohira, T. Tanaka, T. Yoshinaga, F. Kawano, T. Nomura, I. Nonaka, D. L. Allen, R. R. Roy, V. R. Edgerton
    Journal of gravitational physiology : a journal of the International Society for Gravitational Physiology 7(2) P27-30 2000年  
  • T. Nomura, F. Kawano, Y. Sato, A. Ishihara, Y. Ohira
    Journal of gravitational physiology : a journal of the International Society for Gravitational Physiology 7(2) P113-114 2000年  
  • 大平 充宣, 野村 健, 河野 史倫, 野井 倉武憲, 井上 勝一郎
    リハビリテーション医学 36(9) 591-592 1999年9月18日  

MISC

 36

書籍等出版物

 4

主要な講演・口頭発表等

 37

担当経験のある科目(授業)

 24

所属学協会

 3

共同研究・競争的資金等の研究課題

 5

社会貢献活動

 1