Narutoshi Kamiya

(神谷成敏)

Profile Information

Affiliation: University of Hyogo

Researcher number: 80420462
J-GLOBAL ID: 201801005421048355
researchmap Member ID: B000309675

Research Areas

Life sciences / Biophysics /

Papers

Assessment of RNA Force Fields for Dynamic Docking of Small Molecules Using Multicanonical MD Simulations

Gert-Jan Bekker, Yoshifumi Fukunishi, Junichi Higo, Narutoshi Kamiya

Journal of Chemical Theory and Computation, 21(21) 11259-11270, Oct 22, 2025 Peer-reviewedLast authorCorresponding author
A virtual system-coupled molecular dynamics simulation free from experimental knowledge on binding sites: Application to RNA-ligand binding free-energy landscape

Junichi Higo, Kota Kasahara, Shun Sakuraba, Gert-Jan Bekker, Narutoshi Kamiya, Ikuo Fukuda, Takuya Takahashi, Yoshifumi Fukunishi

Biophysics and Physicobiology, 22(2) n/a-n/a, Apr 26, 2025 Peer-reviewed
Structure-activity relationship of PET-degrading cutinase regulated by weak Ca<sup>2+</sup> binding and temperature

Fumiya Kondo, Narutoshi Kamiya, Gert-Jan Bekker, Satoshi Nagao, Nobutaka Numoto, Hiroshi Sekiguchi, Nobutoshi Ito, Masayuki Oda

Biophysics and Physicobiology, 22(2) n/a-n/a, Apr 24, 2025 Peer-reviewed
Structural dynamics of the Ca2+-regulated cutinase towards structure-based improvement of PET degradation activity

Nobutaka Numoto, Fumiya Kondo, Gert-Jan Bekker, Zengwei Liao, Mitsuaki Yamashita, Akira Iida, Nobutoshi Ito, Narutoshi Kamiya, Masayuki Oda

International Journal of Biological Macromolecules, 281 136597-136597, Nov, 2024 Peer-reviewedCorresponding author
Molecular Dynamics Unveils Multiple-Site Binding of Inhibitors with Reduced Activity on the Surface of Dihydrofolate Reductase

Mitsugu Araki, Toru Ekimoto, Kazuhiro Takemura, Shigeyuki Matsumoto, Yunoshin Tamura, Hironori Kokubo, Gert-Jan Bekker, Tsutomu Yamane, Yuta Isaka, Yukari Sagae, Narutoshi Kamiya, Mitsunori Ikeguchi, Yasushi Okuno

Journal of the American Chemical Society, Oct 12, 2024

Misc.

Thermal Stability Estimation of Single Domain Antibodies Using Molecular Dynamics Simulations

Gert-Jan Bekker, Narutoshi Kamiya

Computer-Aided Antibody Design, 151-163, 2023
Dynamic Docking Using Multicanonical Molecular Dynamics: Simulating Complex Formation at the Atomistic Level

Gert-Jan Bekker, Narutoshi Kamiya

Methods in Molecular Biology, 187-202, Mar 24, 2021
Cutinases from thermophilic bacteria (actinomycetes): From identification to functional and structural characterization

Masayuki Oda, Nobutaka Numoto, Gert-Jan Bekker, Narutoshi Kamiya, Fusako Kawai

Methods in Enzymology, 159-185, Feb, 2021
Thermal Stability Estimation of Single-Domain Antibodies by Molecular Dynamics Simulations

神谷成敏

熱測定, 47(4), 2020
内在性リガンドの結合様式からみた核内受容体PPARγの活性化機構

白木琢磨, 神谷成敏, 陣上久人

蛋白質核酸酵素, 50(13) 1660-1665, Nov, 2005

Research Projects

クチナーゼCut190のCa2+結合に伴う動的構造変化とPET分解分子機構の解明

科学研究費助成事業, 日本学術振興会, Apr, 2021 - Mar, 2024

織田昌幸, 関口博史, 沼本修孝, 神谷成敏, 宮ノ入洋平
Complex structure and affinity prediction among cancer vaccine peptides and immune related proteins

Grants-in-Aid for Scientific Research, Japan Society for the Promotion of Science, Apr, 2020 - Mar, 2023
Accurate predictions of complex structure and affinity between proteins and drugs

Grants-in-Aid for Scientific Research, Japan Society for the Promotion of Science, Apr, 2016 - Mar, 2019

Kamiya Narutoshi
Elucidation of information-processing mechanisms during transcription cycle using computational and information sciences

Grants-in-Aid for Scientific Research, Japan Society for the Promotion of Science, Jun, 2012 - Mar, 2017

NAKAMURA Haruki, KAMIYA Narutoshi, KONO Hidetoshi, KASAHARA Kota, IIDA Midori
Development of a complex structure prediction method between proteins using binding free-energy as a scoring function

Grants-in-Aid for Scientific Research, Japan Society for the Promotion of Science, Apr, 2013 - Mar, 2016

Kamiya Narutoshi

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